Clostridioides Difficile PCR

Molecular Biology - Infectious Diseases

Clostridioides difficile is an anaerobic, gram-positive bacillus that is the leading cause of antibiotic associated diarrhoea and pseudomembranous colitis in health care facilities. Incidence of Clostridioides difficile infection has been increasing, and severe cases are becoming more common. Disease symptoms range from mild diarrhoea to sever colitis, and even bowel perforation and death. The most common risk factor is exposure to antibiotics.

The BD MAX Cdiff assay performed on the BD MAX System is an automated in vitro diagnostic test for the direct, qualitative detection of the Clostridioides difficile toxin B (tcdB) gene in human liquid or soft stool specimens from patients suspected of having Clostridioides difficile infection. The test, performed directly on the specimen, utilises real-time polymerase chain reaction (PCR) for the amplification of Clostridioides difficile toxin B DNA and fluorogenic target-specific hybridisation probes for the detection of the amplified DNA.

PCR methods for the detection of toxin B (or toxin A) have been developed with high sensitivity and specificity as compared to cell cytotoxicity and immunoassays. Additionally, the PCR test can be performed in less than 3 hours. The combination of these characteristics may allow for prompt targeted treatment of patients with Clostridioides difficile infection and thus potentially improve patient outcome, reduce recovery time, and improve infection control practices.

Sample Type:

Sample Type: Liquid or soft stool

Minimum Volume: 10μL

Temperature:

  • 2°C - 25°C for up to 48 hours (2 days)
  • 2°C - 8°C for up to 120 hours (5 days)

Turnaround Time:

3 working days from sample receipt

Sample Stability:

2°C - 25°C for up to 48 hours (2 days)

2°C - 8°C for up to 120 hours (5 days)

Laboratory Sample Storage

Primary Sample: 7 days at 2°C - 8°C

Sample Buffer Tubes: 5 days at 2°C - 8°C

Instrument / Procedure:

The BD MAX Cdiff assay performed on the BD MAX System is an automated in vitro diagnostic test for the direct, qualitative detection of the Clostridioides difficile toxin B (tcdB) gene in human liquid or soft stool specimens from patients suspected of having Clostridioides difficile infection. The test, performed directly on the specimen, utilises real-time polymerase chain reaction (PCR) for the amplification of Clostridioides difficile toxin B DNA and fluorogenic target-specific hybridisation probes for the detection of the amplified DNA.

Units:
Reference Range:

Toxigenic Clostridioides difficile Detected

Toxigenic Clostridioides difficile Not Detected

Invalid

Precautions:

Limitations of Test

  • The BD MAX Cdiff assay is intended for use only with unpreserved liquid or soft stools; performance characteristics of other clinical specimen types have not been established.
  • Erroneous test results may occur from improper specimen collection, handling or storage, technical error, sample mix-up or because the number of organisms in the specimen is below the analytical sensitivity of the test.
  • A BD MAX™ Cdiff positive assay result does not necessarily indicate the presence of viable organisms. It does however indicate the presence of the tcdB gene and allows for presumptive detection of a Clostridioides difficile toxigenic organism. The BD MAX™ Cdiff assay cannot be used for species identification as it does not contain primers and probes specific to Clostridioides difficile.
  • As with all PCR-based in vitro diagnostic tests, extremely low levels of target below the limit of detection of the assay may be detected, but results may not be reproducible.
  • Mesalamine rectal suspension enema and Gynol II may cause slight inhibition in the BD MAX™ Cdiff assay (refer to the Interfering Substances section for further details).
  • Tums and Maalox liquid may inhibit the BD MAX™ Cdiff assay (refer to the Interfering Substances section for further details).
  • False negative results may occur due to loss of nucleic acid from inadequate collection, transport or storage of specimens, or due to inadequate bacterial cell lysis. The Sample Processing Control has been added to the test to aid in the identification of specimens that contain inhibitors to PCR amplification. The Sample Processing Control does not indicate if nucleic acid has been lost due to inadequate collection, transport or storage of specimens, or whether bacterial cells have been adequately lysed.
  • BD MAX™ Cdiff assay results may sometimes be Unresolved due to an invalid Sample Processing Control, or be Indeterminate or Incomplete due to System failure, and require retesting that can lead to a delay in obtaining final results.
  • Mutations or polymorphisms in primer- or probe-binding regions may affect detection of Clostridioides difficile tcdB gene variants, resulting in a false negative result with the BD MAX™ Cdiff assay.
  • Variant toxigenic Clostridioides difficile without the tcdB gene or with a non-functional Toxin B protein are very rare.15-18 The BD MAX™ Cdiff assay targets the tcdB gene and it is unknown whether it would detect Toxin A+/Toxin B- variant strains.
  • As with all in vitro diagnostic tests, positive and negative predictive values are highly dependent on prevalence. BD MAX™ Cdiff assay performance may vary depending on the prevalence and population tested.

Download full Primary Sample Management Document
Source:

Source: BD MAX Cdiff REF 442555 P0215(07) 2023-11

Accreditation Status:
Accredited
Not Accredited
Testing Laboratory:
Eurofins Biomnis Ireland

SAMPLE REQUIREMENTS FOR COAGULATION TESTS

PROCEDURE

Sample Requirements and Collection

  • Patients should be relaxed pre-venepuncture. Excessive stress and exercise will increase FVIII, vWF antigen and fibrinolysis. Venous occlusion should be avoided.  
  • Difficult venepuncture with trauma may lead to platelet activation with release of PF4 from alpha granules.
  • Venous blood should be collected into coagulation tubes containing Sodium Citrate 3.2%, 0.105M.
  • Specimens must be mixed immediately post venepuncture to avoid clot activation, by GENTLY inverting the tubes 5 to 10 times.
  • The ratio of whole blood to anticoagulant is crucial to clotting times. A target blood to anticoagulant ratio of 9:1 is optimal.  Under- or over- filled specimens will not be processed this can adversely affect results.  
  • Any warfarin treatment should be mentioned on the request form.
  • Sample rejection Criteria: Clotted sample, grossly hemolyzed sample, underfilled/overfilled specimen, unlabeled sample, mismatched patient ID, aged samples, wrong sample tube (citrate tube only).

Transportation and Storage

  • PT/INR specimens should be transported to the laboratory at room temperature.
  • Coagulation specimens should ideally be analysed within 4 hours of collection. Where this is not possible, centrifuge specimens at room temperature (RT) @ 1500RCF for at least 15 minutes, and then carefully remove the plasma from the cells, transfer to a fresh plastic plain tube and freeze at -20oC.  
  • Non-frozen coagulation specimens should be transported at RT ASAP to avoid deterioration of labile factors V and VIII.
  • Collection of blood through intravenous lines that have been previously flushed with heparin should be avoided. In the event blood is drawn from an indwelling catheter, the line should be flushed with 5ml of saline, and the first 5ml of blood or 6 times the line volume be drawn off and discarded before coagulation tube is filled.
  • Effect of freezing on Coagulation Specimens.
  • A 14days in-house study on the effect of freezing, on coagulation specimens at -20oC, showed that there was negligible and clinically non-significant effect of freezing on coagulation specimen results. Therefore frozen citrated coagulation samples are stable for 14 days at -20oC, post centrifugation. This study is available in-house for reference.
ESR Ref Ranges
Units of Measurement
MALE
FEMALE
>50 Years
mm/hr
0 - ≤12
0 - ≤15
<50 Years
mm/hr
0 - ≤8
0 - ≤10
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Analyte
Units of Measurement
MALE
FEMALE
WBC
10^9/L
4.0–10.0
4.0 - 10.0
RBC
10^12/L
5.0 ± 0.5
4.3 ± 0.5
HB
g/dL
15.0 ± 2.0
13.5 ± 1.5
HCT
L/L
0.45 ± 0.05
0.41 ± 0.05
MCV
fL
92 ± 9
92 ± 9
MCH
pg
29.5 ± 2.5
29.5 ± 2.5
MCHC
g/dL
33.0 ± 1.5
33.0 ± 1.5
PLT
10^9/L
280 ± 130
280 ± 130
MPV
fL
N/A
N/A
RDW
%
11.6 - 14.0
11.6 - 14.0
#Neut
10^9/L
2.0 – 7.0 (40 - 80%)
2.0 – 7.0 (40 - 80%)
#Lymph
10^9/L
1.0 – 3.0 (20 - 40%)
1.0 – 3.0 (20 - 40%)
#Mono
10^9/L
0.2 – 1.0 (2 - 10%)
0.2 – 1.0 (2 - 10%)
#Eos
10^9/L
0.02 – 0.5 (1 - 6%)
0.02 – 0.5 (1 - 6%)
#Baso
10^9/L
0.02 – 0.1 (<1 - 2%)
0.02 – 0.1 (<1 - 2%)
Analyte
Units of Measurement
MALE & FEMALE
WBC
10^9/L
Birth: 18 ± 8
Day 3: 15 ± 8
Day 7: 14 ± 8
Day 14: 14 ± 8
1 Month: 12 ± 7
2 Months: 10 ± 5
3–6 Months: 12 ± 6
1 Year: 11 ± 5
2–6 Years: 10 ± 5
6–12 Years: 9 ± 4
RBC
10^12/L
Birth: 6.0 ± 1.0
Day 3: 5.3 ± 1.3
Day 7: 5.1 ± 1.2
Day 14: 4.9 ± 1.3
1 Month: 4.2 ± 1.2
2 Months: 3.7 ± 0.6
3–6 Months: 4.7 ± 0.6
1 Year: 4.5 ± 0.6
2–6 Years: 4.6 ± 0.6
6–12 Years: 4.6 ± 0.6
HB
g/dL
Birth: 18.0 ± 4.0
Day 3: 18.0 ± 3.0
Day 7: 17.5 ± 4.0
Day 14: 16.5 ± 4.0
1 Month: 14.0 ± 2.5
2 Months: 11.2± 1.8
3–6 Months: 12.6 ± 1.5
1 Year: 12.6 ± 1.5
2–6 Years: 12.5 ± 1.5
6–12 Years: 13.5 ± 2.0
HCT
L/L
Birth: 0.60 ± 0.15
Day 3: 0.56 ± 0.11
Day 7: 0.54 ± 0.12
Day 14: 0.51 ± 0.2
1 Month: 0.43 ± 0.10
2 Months: 0.35 ± 0.07
3–6 Months: 0.35 ± 0.05
1 Year: 0.34 ± 0.04
2–6 Years: 0.37 ± 0.03
6–12 Years: 0.40 ± 0.05
MCV
fL
Birth: 110 ± 10
Day 3: 105 ± 13
Day 7: 107 ± 19
Day 14: 105 ± 19
1 Month: 104 ± 12
2 Months: 95 ± 8
3–6 Months: 76 ± 8
1 Year: 78 ± 6
2–6 Years: 81 ± 6
6–12 Years: 86 ± 9
MCH
pg
Birth: 34 ± 3
Day 3: 34 ± 3
Day 7: 34 ± 3
Day 14: 34 ± 3
1 Month: 33 ± 3
2 Months: 30 ± 3
3–6 Months: 27 ± 3
1 Year: 27 ± 2
2–6 Years: 27 ± 3
6–12 Years: 29 ± 4
MCHC
g/dL
Birth: 33.0 ± 3.0
Day 3: 33.0 ± 4.0
Day 7: 33.0 ± 5.0
Day 14: 33.0 ± 5.0
1 Month: 33.0 ± 4.0
2 Months: 32.0 ± 3.5
3–6 Months: 33.0 ± 3.0
1 Year: 34.0 ± 2.0
2–6 Years: 34.0 ± 3.0
6–12 Years: 34.0 ± 3.0
PLT
10^9/L
Birth: 100 – 450
Day 3: 210 – 500
Day 7: 160 – 500
Day 14: 170 – 500
1 Month: 200 – 500
2 Months: 210 – 650
3–6 Months: 200 – 550
1 Year: 200 – 550
2–6 Years: 200 – 490
6–12 Years: 170 – 450
Reticulocytes
10^9/L
Birth: 120 – 400
Day 3: 50 – 350
Day 7: 50 – 100
Day 14: 50 - 100
1 Month: 20 – 60
2 Months: 30 – 50
3–6 Months: 40 – 100
1 Year: 30 – 100
2–6 Years: 30 – 100
6–12 Years: 30 – 100
#Neut
10^9/L
Birth: 4 – 14
Day 3: 3 – 5
Day 7: 3 – 6
Day 14: 3 – 7
1 Month: 3 – 9
2 Months: 1.0 – 5
3–6 Months: 1 – 6
1 Year: 1 – 7
2–6 Years: 1.5 – 8
6–12 Years: 2 – 8
#Lymph
10^9/L
Birth: 3 – 8
Day 3: 2 – 8
Day 7: 3 – 9
Day 14: 3 – 9
1 Month: 3 – 16
2 Months: 4 – 10
3–6 Months: 4 – 12
1 Year: 3.5 – 11
2–6 Years: 6 - 9
6–12 Years: 1 - 5
#Mono
10^9/L
Birth: 0.5 – 2.0
Day 3: 0.5 – 1.0
Day 7: 0.1 – 1.7
Day 14: 0.1 – 1.7
1 Month: 0.3 – 1.0
2 Months: 0.4 – 1.2
3–6 Months: 0.2 – 1.2
1 Year: 0.2 – 1.0
2–6 Years: 0.2 – 1.0
6–12 Years: 0.2 – 1.0
#Eos
10^9/L
Birth: 0.1 – 1.0
Day 3: 0.1 – 2.0
Day 7: 0.1 – 0.8
Day 14: 0.1 – 0.9
1 Month: 0.2 – 1.0
2 Months: 0.1 – 1.0
3–6 Months: 0.1 – 1.0
1 Year: 0.1 – 1.0
2–6 Years: 0.1 – 1.0
6–12 Years: 0.1 – 1.0
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